AuverGrid - Grille régionale en Auvergne 2007-2013

Production scientifique

La production scientifique d’AuverGrid rassemble plusieurs centaines de publications et continue de s’accroître puisque des ressources sont toujours intégrées à la grille de production nationale.

Les publications sont regroupées par thématiques scientifiques.

Recherche en bio informatique

2013

MAIRE V., GROSS N., WIRTH C., HILL D., SOUSSANA JF, ‘Disentangling coordination among functional traits using an individual-centred model : Impact on plant performance at intra- and inter-specific levels’, PLoS ONE, PONE-D-12-04213R3, October 2013, Volume 8, Issue 10, pp. 1-16.

TOTTEYA W., DENONFOUXA J., JAZIRI F., PARISOT N., MISSAOUI M., HILL D., BORRELA G., PEYRETAILLADE E., ALRICA M., HARRISC H., JEFFERY IB, CLAESSON MJ, O’TOOLE PW, PEYRET P, BRUGÈRE JF, “The human Gut Chip ‘HuGChip’ an explorative phylogenetic microarray for determining gut microbiome diversity at Family level, PLoS ONE (2013), 8(5) : e62544. doi:10.1371/journal.pone.0062544

FAOUZI J., PEYRETAILLADE E., PEYRET P., HILL D., “Fast Distributed Computing for Complete Large Scale Backtranslation of Oligopeptides : Application to probe design”, Proceedings of the 2013 International Conference on High Performance Computing & Simulation, ACM/IEEE/IFIP, Helsinki July 1st-5th, 2013, pp. 251-258.

PASSERAT-PALMBACH J., CAUX J., LE PENNEC Y., REUILLON R., JUNIER I., KEPES F., HILL D., “Parallel Stepwise Stochastic Simulation : Harnessing GPUsto Explore Possible Futures States of a Chromosome Folding Model Thanks to the Possible Futures Algorithm (PFA)”, Sigsim PADS 2013, May 19-22, Montreal, pp 169-177.

2012

DUGAT-BONY E., PEYRETAILLADE E., PARISOT N., BIDERRE-PETIT C., JAZIRI F., HILL D., RIMOUR S., PEYRET P., Detecting unknown sequences with DNA microarrays : explorative probe design strategies, Environmental microbiology. 2012 ; 14(2):356-71.

JAZIRI F., HILL D., PARISOT N., DENONFOUX J., DUGAT-BONY E., PEYRETAILLADE E., PEYRET P., “MetaExploArrays : a large-scale oligonucleotide probe design software for explorative DNA microarrays”, IEEE PDCAT 2012, 13th International Conf. On Paralell and Distributed Systems, 14-16 Decembre, Pekin, Chine, ISBN 978-0-7695-4879-1, pp. 664-671.

2011

DUGAT-BONY E., PEYRETAILLADE E., PARISOT N., BIDERRE-PETIT C., JAZIRI F., HILL D., RIMOUR S., PEYRET P., Detecting unknown sequences with DNA microarrays : explorative probe design strategies, Environmental Microbiology, 2011, Doi :10.1111/J.1462-2920.2011.02559.x.

JAZIRI F., MISSAOUI M., CIPIERE S., PEYRET P., HILL D., “Large Scale Parallelization Method of 16S rRNA Probe Design Algorithm on Distributed Architecture : Application to Grid Computing”, IEEE ICI2011, International Conference on Informatics and Computational Intelligence, Bandung, Indonesia, 12-14 December 2011

JAZIRI F., CIPIERE S., MISSAOUI M., DENONFOUX J., DUGAT-BONY E., PARISOT N., MAHUL A., RIMOUR S., PEYRETAILLADE E., PEYRET P., HILL D., “Détermination de sondes oligonucléotidiques pour biopuces phylogénétiques en environnement grille de calcul.”, Rencontres Scientifiques France Grilles, Lyon 2011, 4 p.

Portage de ePANAM sur la grille de calculs, T. T. Doan, N. Taib, H.Q. Nguyen, J-C Charvy, G. Bronner, V. Breton, D. Debroas, E. Mephu, Proceedings of Rencontres Scientifiques France Grilles, 2011, http://hal.in2p3.fr/docs/00/66/01/4...

2010

MISSAOUI M., DUGAT-BONY E., HILL D., GOUINAUD C. and PEYRET P., “High Specific Microarrays Oligonucleotide Design for Studying Complex Environments”, UMR CNRS 6158, LIMOS/RR-10-05, 32 p.

2009

MISSAOUI M., HILL D., PEYRET P., Blastog : a Parallel BLAST-based Software for Functional Microarrays Probe Design using the EGEE Computing Grid, International Conference on Grid Computing and Applications, GCA-WorldComp 2009, Las-Vegas, July 13-16, pp. 126-132.

GOUINAUD G., HILL D., PEYRET P. AND YON L., “Findind spot shape in cdna microarray by using a deformable grid and a Markov segmentation”, UMR CNRS 6158, LIMOS/RR-09-02, 2009, 33 p.

2008

MISSAOUI M., HILL D., PEYRET P. Comparison of Algorithms for a Complete Backtranslation of Oligopeptides, 2008, special issue, IJCBDD, International Journal of Computational Biology and Drug Design 2008 - Vol. 1, No.1, pp. 26 – 38.

2007

MILITON C., RIMOUR S., MISSAOUI M., BIDERRE C., BARRA V., HILL D., MONE A., GAGNE G., MEIER H., PEYRETAILLADE E. and PEYRET P., “PhylArray : Phylogenetic Probe Design Algorithm for MicroArray“, Bioinformatics 2007 ; doi : 10.1093/bioinformatics/btm392, Vol. 23, pp.2550-2557.

MISSAOUI M., MILITON C., HILL D., PEYRET P., “Complete Backtranslation of Oligopeptides for Metabolic Pathways Exploration of Complex Environments Using Functional Microarrays”, IEEE 7th International Conference on BioInformatics and BioEngineering, Harvard, October 14-17, 2007, pp. 1275-1279.

MISSAOUI M., HILL D. AND PEYRET P., “DegenRev : Degeneracy-Based Full Backtranslation Algorithm for Oligopeptide”, UMR CNRS 6158, LIMOS/RR-07-10, 2007, 10 p.

Salzemann J., Jacq N. and Breton V., Replication and Update of Molecular Biology Databases, IEEE Transactions on NanoBiosciences, Vol.6 n°2 (2007), 131-135

Milanesi L., Armano G., Breton V. and Romano P., Special section on Grid, Web services, Software Agents and Ontology Applications for Life Sciences, IEEE Transactions on NanoBiosciences, Vol. 6, n°2 (2007), 101-103

Aloisio G., Breton V., Mirto M., Murli A., Solomonidès T., Special section : Life Science grids for biomedicine and bioinformatics, Future Generation Computing Systems 23 (2007) 367-370

Chimie computationnelle

2013

T.Q. Bui, E. Medernach, T.T. Doan, S. Hwang, D. Kim, H.Q. Nguyen, Q.L. Pham and V. Breton, Stretch optimization for virtual screening on multi-user pilot-agent platforms on grid/cloud, accepted for publication in Trends in Computer Science and Engineering, July 2013

T.H. Nguyen, S. Lee, S.-w. Hwang, S.-w. Rho, V. Breton, D. Kim, Virtual screening and inhibition assay of human intestinal maltase and 3C-like protease of SARS using molecular docking on WISDOM production environment, accepted for publication in Trends in Computer Science and Engineering, July 2013

Quang, Nguyen Hong, Emmanuel Medernach, and Vincent Breton. “Scheduling of virtual screening application on multi-user pilot-agent platform on grid/cloud to optimize the stretch.” In Proceedings of the International Conference on Bioinformatics, Computational Biology and Biomedical Informatics, p. 692. ACM, 2013.

2012

T.Q. Bui, T.T. Doan, H.T. Nguyen, Q.M. Pham, S.V. Nguyen, V. Breton, L.Q. Pham, H.M. Le, H.Q. Nguyen and E. Medernach, On the Performance Enhancement of WISDOM Production Environment, Proceedings of International Symposium on Grids and Clouds, PoS(ISGC 2012)001, http://pos.sissa.it/cgi-bin/reader/...

2011

T. T. H. Nguyen, H-J Ryu, S-H Lee, S. Hwang, V. Breton, J-H Rhee and D. Kim, Virtual screening identification of novel severe acute respiratory syndrome 3C-like protease inhibitors and in vitro confirmation, Bioorganic & Medicinal Chemistry Letters, Volume 21, Issue 10 (2011) 3088-3091

T. T. H. Nguyen, H-J Ryu, S-H Lee, S. Hwang, V. Breton, J-H Rhee and D. Kim, Virtual screening identification of novel severe acute respiratory syndrome 3C-like protease inhibitors and in vitro confirmation, Bioorganic & Medicinal Chemistry Letters, Volume 21, Issue 10 (2011) 3088-3091

Criblage virtuel sur grille de composés isolés au Vietnam, T. Quang Bui, T. Tung Doan , V. Son Nguyen, Vincent Breton, H. Quang Nguyen, Q. Long Pham, M. Huong Le, Proceedings of Rencontres Scientifiques France Grilles, 2011, http://hal.archives-ouvertes.fr/doc...

2009

V. Kasam, V. Breton, A. Dacosta, (2009) WISDOM Collaboration, In Silico Docking against Malaria : The WISDOM initiative , INFECTION GENETICS AND EVOLUTION, 9 (3):376-377 2009, ISSN 1567-1348

S. Ahn, N. Kim, S. Lee, D. Nam, S. Hwang, B. Koblitz, V. Breton, SY Han, Performance analysis and optimization of AMGA for the large-scale virtual screening, Software-practice and experience, Volume 39 Issue 12 , 1055-1072 (25 August 2009)

Vinod kasam, Jean Salzemann, Marli Botha, Ana Dacosta, Gianluca Degliesposti, Raul Isea, Doman Kim, Astrid Maass, Colin Kenyon, Giulio Rastelli, Martin Hofmann-Apitius, Vincent Breton, WISDOM-II : Screening against multiple targets implicated in malaria using computational grid infrastructures, Malaria Journal 2009, 8:88 (1 May 2009)

V. Breton, A. Da Costa, P. De Vlieger, Y-M Kim, L. Maigne, R. Reuillon, D. Sarramia, T. N. Hai, H. Q. Nguyen, D. Kim, Y.-T. Wu, Innovative in silico approaches to address avian flu using grid technology, Infectious Disorders – Drug Targets, Volume 9, Number 3 (2009) 358-365

Gianluca Degliesposti, Vinod Kasam, Ana Da Costa, Hee-Kyoung Kang, Nahyun Kim, Do-Won Kim, Vincent Breton, Doman Kim and Giulio Rastelli, Design and discovery of novel plasmepsin II inhibitors using an automated workflow on large scale grids, ChemMedChem, Volume 4 , Issue 7, 1164-1173 (July 2009)

2008

N. Jacq, J. Salzemann, Y. Legré, M. Reichstadt, F. Jacq, E. Medernach, M. Zimmermann, A. Maaß, M. Sridhar, K. Vinod-Kusam, J. Montagnat, H. Schwichtenberg, M. Hofmann, V. Breton, Grid enabled virtual screening against malaria, Journal of Grid Computing Vol 6 n°1, 29-43, 2008

Breton V., Jacq N., Kasam V, Hofmann-Apitius M., Grid added value to address malaria, IEEE Transactions on Information Technology in Biomedicine, Vol 12, N°2 (2008) 173-181, published in March 2008

2007

V. Kasam, A. Maaß, H. Schwichtenberg, M. Zimmermann, A. Wolf, N. Jacq, V. Breton, M. Hofmann, Design of Plasmepsine Inhibitors : A virtual high throughput screening approach on the EGEE Grid, J. Chem. Inf. Model., 47 (5), 1818 -1828, 2007

Jacq N., Breton V., Chen H.-Y., Ho L.-Y., Hofmann M., Kasam V., Lee H.-C., Legré Y., Lin S.C., Maaß A., Medernach E., Merelli I., Milanesi L., Rastelli G., Reichstadt M., Salzemann J., Schwichtenberg H., Sridhar M., Wu Y.-T., Zimmermann M., Virtual Screening on Large Scale Grids, Parallel Computing Volume 33, Issue 4-5 (2007) 289-301

J. Salzemann, V. Kasam, N. Jacq, A. Mass, H. Schwichtenberg and V. Breton, Grid Enabled High Throughput Virtual Screening Against Four Different Targets Implicated in Malaria, Proceedings of Healthgrid conference 2007, Studies in Health Technology and Informatics, Vol. 126 (2007), 47-54

N. Jacq, V. Breton, H.-Y. Chen, L.-Y., Ho, M. Hofmann, H.-C. Lee, Y. Legré, S.C. Lin, A. Maaß, E. Medernach, I. Merelli, L. Milanesi, G. Rastelli, M. Reichstadt, J. Salzemann, H. Schwichtenberg, M. Sridhar, V. Kasam, Y.-T. Wu, M. Zimmermann, Grid-enabled High Throughput Virtual Screening, published in the proceedings of International Workshop on Distributed, High-Performance and Grid Computing in Computational Biology, satellite workshop of ECCB conference, Eilat, Jan 2007, Lecture Notes in Computer Science, 2007(4360 ) p. 45-59.

Recherche en physique

Toutes les publications du LHC sont cosignées par les personnels du LPC membres des collaborations ALICE, ATLAS et LHCb. Ces publications sont disponibles en open access sur les archives HAL du CNRS ou sur Google Scholar Google Scholar.

Recherche en informatique

2013

LARDY R., BACHELET B, BELLOCCHI G., HILL D, “Towards vulnerability minimization of grassland Soil Organic Matter using metamodels”, Environmental Modelling & Software, ENVSOFT-D-13-00648R2, Accepted paper to be published in 2013.

MAIRE V., GROSS N., WIRTH C., HILL D., SOUSSANA JF, ‘Disentangling coordination among functional traits using an individual-centred model : Impact on plant performance at intra- and inter-specific levels’, PLoS ONE, PONE-D-12-04213R3, October 2013, Volume 8, Issue 10, pp. 1-16.

PASSERAT-PALMBACH J., CAUX J., SCHWEITZER P., SIREGARD P., HILL D., “Harnessing aspect oriented programming on GPU : application to warp-level parallelism (WLP)”, The International Journal of Computer Aided Engineering and Technology. Invited paper to be published in 2015. Extended version of a best paper.

TOTTEYA W., DENONFOUXA J., JAZIRI F., PARISOT N., MISSAOUI M., HILL D., BORRELA G., PEYRETAILLADE E., ALRICA M., HARRISC H., JEFFERY IB, CLAESSON MJ, O’TOOLE PW, PEYRET P, BRUGÈRE JF, “The human Gut Chip ‘HuGChip’ an explorative phylogenetic microarray for determining gut microbiome diversity at Family level, PLoS ONE (2013), 8(5) : e62544. doi:10.1371/journal.pone.0062544

SMARI W., FIORE S., HILL D., “High Performance Computing and Simulation : Architectures, Systems, Algorithms, Technologies, Services and Applications”, Editorial of the special Issue for High Performance Computing and Simulation. Concurrency and Computation : Practice and Experience, June 2013, Vol. 25, Issue 10, pp. 1313-1318.

HILL D. PASSERAT-PALMBACH J. MAZEL C., TRAORE, M.K., “Distribution of Random Streams for Simulation Practitioners”, Concurrency and Computation : Practice and Experience, June 2013, Vol. 25, Issue 10, pp. 1427-1442.

MAIRE V., SOUSSANA J-F, GROSS N., BACHELET B., MARTIN R., PAGES L., REINHOLD T., WIRTH C. & HILL D. Plasticity of plant form and function sustains productivity and dominance along environment and competition gradients. A modeling experiment with Gemini. Ecological Modelling, 2013, Vol. 254, pp. 80-91.

PASSERAT-PALMBACH J. AND HILL D. “OpenCL : A Suitable Solution to Simplify and Unify High Performance Computing Developments”. Chapter 8 in F. Magoul`es, (Editor), Patterns for Parallel Programming on GPUs. Saxe-Coburg Publications, Stirlingshire, Scotland, pp. 189-209.

FAOUZI J., PEYRETAILLADE E., PEYRET P., HILL D., “Fast Distributed Computing for Complete Large Scale Backtranslation of Oligopeptides : Application to probe design”, Proceedings of the 2013 International Conference on High Performance Computing & Simulation, ACM/IEEE/IFIP, Helsinki July 1st-5th, 2013, pp. 251-258.

PASSERAT-PALMBACH J., REUILLON R., MAZEL, C., HILL D., “Prototyping Parallel Simulations on Manycore Architectures Using Scala : A Case Study”, Proceedings of the 2013 International Conference on High Performance Computing & Simulation, ACM/IEEE/IFIP, Helsinki July 1st-5th, 2013, pp. 405-412.

SCHWEITZER, P., MAZEL, C., FEHR, F., CÂRLOGANU, C., HILL D., “Proper parallel Monte Carlo for computed tomography of volcanoes”, Proceedings of the 2013 International Conference on High Performance Computing & Simulation, ACM/IEEE/IFIP, Helsinki July 1st-5th, 2013, pp. 519-526.

PASSERAT-PALMBACH J., CAUX J., LE PENNEC Y., REUILLON R., JUNIER I., KEPES F., HILL D., “Parallel Stepwise Stochastic Simulation : Harnessing GPUsto Explore Possible Futures States of a Chromosome Folding Model Thanks to the Possible Futures Algorithm (PFA)”, Sigsim PADS 2013, May 19-22, Montreal, pp 169-177.

2012

DUGAT-BONY E., PEYRETAILLADE E., PARISOT N., BIDERRE-PETIT C., JAZIRI F., HILL D., RIMOUR S., PEYRET P., Detecting unknown sequences with DNA microarrays : explorative probe design strategies, Environmental microbiology. 2012 ; 14(2):356-71.

PASSERAT-PALMBACH J., HILL D., MAZEL C., Pseudo-random streams for distributed and parallel stochastic simulations on GP-GPU, Advance online publication, 22 June 2012 ; doi:10.1057/jos.2012.8, Journal of Simulation (2012) 6, 141–151.

MAIRE V., SOUSSANA J-F, GROSS N., BACHELET B., MARTIN R., PAGES L., HILL D. & WIRTH C.(2012) GEMINI : a grassland model simulating the role of plant traits for community dynamics and ecosystem functioning : Part I : Parameterization and Evaluation. Ecological Modelling 231 : 134-145.

REUILLON R., TRAORE M.K., PASSERAT J., HILL D., “Parallel stochastic simulations with rigorous distribution of pseudo-random numbers with DistMe : Application to Life Science simulations”, Concurrency and Computation, Practice & Experience, in special Issue for High Performance Computing and Simulation, W. Samari Ed, DOI : 10.1002/cpe.1883. Concurrency Computat. : Pract. Exper. 2012, Vol. 24, pp. 723–738

JAZIRI F., HILL D., PARISOT N., DENONFOUX J., DUGAT-BONY E., PEYRETAILLADE E., PEYRET P., “MetaExploArrays : a large-scale oligonucleotide probe design software for explorative DNA microarrays”, IEEE PDCAT 2012, 13th International Conf. On Paralell and Distributed Systems, 14-16 Decembre, Pekin, Chine, ISBN 978-0-7695-4879-1, pp. 664-671.

PASSERAT-PALMBACH J., FOREST A., PAL J., CORBARA B., HILL D., “Automatic Parallelization of a Gap Model using Java and OpenCL”, ESM 2012, The 2012 European Simulation and Modelling Conference, Essen, Germany, Oct. 22-24, pp. 24-31.

CIPIERE S., DE VLIEGER P., SARAMIA D., HILL D., MAIGNE L., “Development of a metamodel for medical database management on a grid network Application to Health Watch and epidemiology for cancer and perinatal health.”, CCGrid 2012 — The 12th IEEE/ACM International Symposium on Cluster, Cloud and Grid Computing. au sein du Workshop on Modeling and Simulation on Grid and Cloud Computing (MSGC 2012), pp 892-897. LARDY, R., MARTIN, R., BACHELET, B., HILL, D., R., C., BELLOCCHI, B., 2012b Ecosystem Climate Change Vulnerability Assessment Framework. iEMSs 2012, 6th Biennial Meeting of International Congress on Environmental Modelling and Software : Managing Resources of a Limited Planet : Pathways and Visions under Uncertainty. Seppelt, R., Voinov, A., A., Lange, S., Bankamp, D., (Eds.), 1-5 July, 2012, Leipzig, Germany, 777-784. Best paper award.

LARDY, R., GRAUX, A-I., BACHELET, B., HILL, D., R., C., BELLOCCHI, G., 2012a. Steady-state soil organic matter approximation model : application to the Pasture Simulation Model. iEMSs 2012, 6th Biennial Meeting of International Congress on Environmental Modelling and Software : Managing Resources of a Limited Planet : Pathways and Visions under Uncertainty. Seppelt, R., Voinov, A., A., Lange, S., Bankamp, D., (Eds.), 1-5 July, 2012, Leipzig, Germany, 769-776.

PASSERAT-PALMBACH J., MAZEL C., HILL D., “ThreadLocalMRG32k3a : A Statistically Sound Substitute to Pseudorandom Number Generation in Parallel Java Applications”, IEEE, International Conference on High Performance Computing & Simulation (HPCS 2012), Madrid, pp. 543-550. Nominated for the HPCS 2012 Outstanding Paper Award.

PASSERAT-PALMBACH J., HILL D., “How to Correctly Deal with Pseudorandom Numbers in Manycore Environments ? Application to GPU Programming with Shoverand”, IEEE, International Conference on High Performance Computing & Simulation (HPCS 2012), Madrid, Tutorial paper, pp. 25-31.

HILL D., “How do we safely distribute random streams to our parallel stochastic models”, Asian Simulation Technology Conference, February 24-26, 2012, Ritsumeikan University, Kyoto, Japan, Tutorial paper, pp. 5-10.

CIPIERE S., BRETON V., DE VLIEGER P., GASPARD S., GERBAUD L., LEGER S., LELONG A., XINRAN L., MANSET D., OUCHCHANE L., REVILLARD J., SARRAMIA D., HILL D., MAIGNE L., “GINSENG , une infrastructure de grille au service de l’e-santé et de l’épidémiologie”, GISEH 2012, 308 au 19 Quebec, Canada, Digital Proceedings, 9 p.

PASSERAT-PALMBACH J. HILL D., « Génération parallèle de nombres pseudo-aléatoires pour le calcul à haute performance. Application aux processeurs de type GP-GPU. 16ème JSED SPI, Modélisation de systèmes complexes en lien avec l’expérimentation, Approches Interdisciplinaires, 25-26 Juin 2012, Clermont-Ferrand, ISSN 0249-7042, N°124 (56), pp. 33,42. Best paper award.

2011

DUGAT-BONY E., PEYRETAILLADE E., PARISOT N., BIDERRE-PETIT C., JAZIRI F., HILL D., RIMOUR S., PEYRET P., Detecting unknown sequences with DNA microarrays : explorative probe design strategies, Environmental Microbiology, 2011, Doi :10.1111/J.1462-2920.2011.02559.x.

BRETON V., HILL D., MAIGNE L., SARAMIA D., “Eight years using grids for life sciences”, in Collaborative Computational Technologies for Biomedical Research edited by Sean Ekins, Maggie A. Hupcey, and Antony J. Williams, John Wiley & Sons, Inc, 2011. pp. 221-240.

JAZIRI F., MISSAOUI M., CIPIERE S., PEYRET P., HILL D., “Large Scale Parallelization Method of 16S rRNA Probe Design Algorithm on Distributed Architecture : Application to Grid Computing”, IEEE ICI2011, International Conference on Informatics and Computational Intelligence, Bandung, Indonesia, 12-14 December 2011 (accepted for publication).

LARDY R., BELLOCCHI G., BACHELET B., HILL D., “Climate Change vulnerability assessment with constrained design of experiments, using a model driven approach”, ESM 2011, Oct. 24-26, Guimarães, Portugal, pp. 354-362.

PASSERAT-PALMBACH J., CAUX J., SIREGAR P., MAZEL C., HILL D., “Warp-Level Parallelism : Enabling Multiple Replications in Parallel on GPU”, ESM 2011, Oct. 24-26, Guimarães, Portugal, pp. 76-83, Best paper award.

PASSERAT-PALMBACH J., MAZEL C., BACHELET B., HILL D., “ShoveRand : a model-driven framework to easily generate random numbers on GP-GPU”, IEEE, International Conference on High Performance Computing & Simulation (HPCS 2011), Istanbul, accepted for publication, pp. 41-48.

HILL D., “ Distribution of Random Streams in Stochastic Models in the age of multi-core and manycore processors”, 25th ACM/IEEE/SCS Workshop on Principles of Advanced and Distributed Simulation (PADS 2011), Keynote speech, p. 2.

PASSERAT-PALMBACH J., MAZEL C., HILL D., “Pseudo-Random Number Generation on GP-GPU”, 25th ACM/IEEE/SCS Workshop on Principles of Advanced and Distributed Simulation (PADS 2011), pp. 146-153.

LARDY, R., GRAUX, A.-I., GAURUT, M., BELLOCCHI, G., HILL, D., “Model Driven Reverse Engineering For A Grassland Model With Design Of Experiment In The Context Of Climate Change”, Summer Simulation Conference 2011, The Hague, 27-29 June, Book 3, pp. 199-206.

JAZIRI F., CIPIERE S., MISSAOUI M., DENONFOUX J., DUGAT-BONY E., PARISOT N., MAHUL A., RIMOUR S., PEYRETAILLADE E., PEYRET P., HILL D., “Détermination de sondes oligonucléotidiques pour biopuces phylogénétiques en environnement grille de calcul.”, Rencontres Scientifiques France Grilles, Lyon 2011, 4 p.

2010

FILIPPI JB, KOMATSU T., HILL D., “Environmental models in DEVS, different approches for different application.”, Discrete Event Simulation and Modeling : Theory and Applications, Ed. G. Wainer & P.J. Mosterman, Taylor and Francis Group, ISBN 9781420053364, Chapter 14, pp.357-386, 2010.

REUILLON R., CHUFFART F., LECLAIRE M., FAURE T., DUMOULIN D., HILL D., “Declarative Task Delegation in OpenMole”, International Conference on High Performance Computing & Simulation (HPCS 2010) IEEE, Caen, June 28 – July 2, pp. 55-62.

PASSERAT-PALMBACH J., MAZEL C., MAHUL A., HILL D., “Reliable Initialization of GPU-enabled Parallel Stochastic Simulations Using Mersenne Twister for Graphics Processors”, ESM 2010, European Simulation, October 25-27, 2010, Hasselt University, Belgium, pp. 187-195.

HILL D., “Practical Distribution of Random Streams for Stochastic High Performance Computing”, Invited Paper in IEEE, International Conference on High Performance Computing & Simulation (HPCS 2010), Caen, June 28 – July 2, Keynote speech invited paper, pp. 1-8.

MISSAOUI M., DUGAT-BONY E., HILL D., GOUINAUD C. and PEYRET P., “High Specific Microarrays Oligonucleotide Design for Studying Complex Environments”, UMR CNRS 6158, LIMOS/RR-10-05, 32 p.

2009

GRAUX, A. I., SOUSSANA, J. F., BRISSON, N., HILL, D., & LARDY, R. (2009)-. Modelling climate change impacts on grasslands and possible adaptations of liverstock systems. In “Climate Change Congress : Globas Risks, Challenges and Decisions” (I. C. S. E. a. E. Science, ed.), Vol. 6, pp. 242-246. University of Copenhague, Danemark.

INNOCENTI E, SILVANI X., MUZY A., HILL D., “A software framework for fine grain parallelization of cellular models with OpenMP : Application to fire spread”, Environmental Modelling & Software, Vol 24, 2009, pp. 819–831.

GRAUX A-I., SOUSSANA J-F., LARDY R., HILL D., “Modélisation du changement climatique sur les prairies”, Sciences (AFAS), n° spécial Changement Climatique et Biodiversité, 2009, pp. 211-225.

MISSAOUI M., HILL D., PEYRET P., Blastog : a Parallel BLAST-based Software for Functional Microarrays Probe Design using the EGEE Computing Grid, International Conference on Grid Computing and Applications, GCA-WorldComp 2009, Las-Vegas, July 13-16, pp. 126-132.

HILL D., “Simulation Informatique au Service des Sciences de la Vie”, Université Blaise Pascal, 2009, 210 p.

GOUINAUD G., HILL D., PEYRET P. AND YON L., “Findind spot shape in cdna microarray by using a deformable grid and a Markov segmentation”, UMR CNRS 6158, LIMOS/RR-09-02, 2009, 33 p.

2008

MISSAOUI M., HILL D., PEYRET P. Comparison of Algorithms for a Complete Backtranslation of Oligopeptides, 2008, special issue, IJCBDD, International Journal of Computational Biology and Drug Design 2008 - Vol. 1, No.1, pp. 26 – 38.

REUILLON R., HILL D., EL BITAR Z. AND BRETON V., Rigorous distribution of stochastic simulations using the DistMe toolkit, IEEE Transactions On Nuclear Science, Vol. 55, No. 1, February 2008, pp. 595-603.

REUILLON R., HILL D., GOUINAUD C., EL BITAR Z., BRETON V., BUVAT I., “Monte Carlo Simulation With The GATE Software Using Grid Computing”, ACM - NOTERE 2008, New Technologies in Distributed Systems, Lyon, June 23-27th, 2008, pp. 201-204.

2007

MILITON C., RIMOUR S., MISSAOUI M., BIDERRE C., BARRA V., HILL D., MONE A., GAGNE G., MEIER H., PEYRETAILLADE E. and PEYRET P., “PhylArray : Phylogenetic Probe Design Algorithm for MicroArray“, Bioinformatics 2007 ; doi : 10.1093/bioinformatics/btm392, Vol. 23, pp. 2550-2557.

EL BITAR Z., HILL D., BRETON V., BUVAT I., Impact of the choice of functional regions in targeted fully 3D SPECT reconstruction, IEEE Nuclear Science Symposium Conference Record, pp. 3491-3494, 2007.

MISSAOUI M., MILITON C., HILL D., PEYRET P., “Complete Backtranslation of Oligopeptides for Metabolic Pathways Exploration of Complex Environments Using Functional Microarrays”, IEEE 7th International Conference on BioInformatics and BioEngineering, Harvard, October 14-17, 2007, pp. 1275-1279.

EL BITAR Z., HILL D., BRETON V., BUVAT I., “Impact of the choice of functional regions in targeted fully 3D SPECT reconstruction”. IEEE Nuclear Science Symposium Conference Record, CD Proceedings, 2007.

REUILON R., HILL D., EL BITAR Z., BRETON V., DistMe : A Java Based Toolbox for the Distribution of Parallel Monte Carlo Simulations. Application to Nuclear Medicine Using the GATE Simulation Package, International Conference on Parallel and Distributed Processing Techniques and Applications, June 25–28, 2007, Las Vegas, Nevada, USA., pp. 122-127.

MISSAOUI M., MILITON C., HILL D., GOUINAUD C. and PEYRET P., “PRT : Parallel program for a full backtranslation of oligopeptides”, UMR CNRS 6158, LIMOS/RR-07-11, 2007, 19 p.

MISSAOUI M., HILL D. AND PEYRET P., “DegenRev : Degeneracy-Based Full Backtranslation Algorithm for Oligopeptide”, UMR CNRS 6158, LIMOS/RR-07-10, 2007, 10 p.

Une formation Administrateurs de site, 2ème module : YAIM
International Symposium on Grids and Clouds & Open Grid Forum